[INFO] cloning repository https://github.com/seb-hyland/alphafold
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/seb-hyland/alphafold" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fseb-hyland%2Falphafold", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fseb-hyland%2Falphafold'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 423b17a00fa0dc3f348d2e9542dddf624249cf32
[INFO] fixing seb-hyland/alphafold against try#622891a4e29178280638a6b63a8908bde2c0c854+cargoflags=-Zfix-edition=start=2015 for pr-157817-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fseb-hyland%2Falphafold" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-4-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/seb-hyland/alphafold
[INFO] finished tweaking git repo https://github.com/seb-hyland/alphafold
[INFO] tweaked toml for git repo https://github.com/seb-hyland/alphafold written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/seb-hyland/alphafold on toolchain 622891a4e29178280638a6b63a8908bde2c0c854
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/seb-hyland/alphafold already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/seb-hyland/maestro.git`
[INFO] [stderr]     Updating git repository `https://github.com/seb-hyland/dagger.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded toml_datetime v0.7.2
[INFO] [stderr]   Downloaded serde_spanned v1.0.2
[INFO] [stderr]   Downloaded toml_parser v1.0.3
[INFO] [stderr]   Downloaded toml v0.9.7
[INFO] [stderr]   Downloaded toml_writer v1.0.3
[INFO] [stderr]   Downloaded layout-rs v0.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88
[INFO] running `Command { std: "docker" "start" "077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=" "-w" "/opt/rustwide/workdir" "--user" "0:0" "077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fix" "--allow-no-vcs" "--allow-dirty" "--frozen" "--all" "--all-targets" "--message-format=json" "-Zfix-edition=start=2015", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.176
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling cfg-if v1.0.3
[INFO] [stderr]    Compiling winnow v0.7.13
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling toml_writer v1.0.3
[INFO] [stderr]     Checking toml_datetime v0.7.2
[INFO] [stderr]     Checking serde_spanned v1.0.2
[INFO] [stderr]     Checking layout-rs v0.1.3
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking toml_parser v1.0.3
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking toml v0.9.7
[INFO] [stderr]     Checking session_gen v0.1.0 (https://github.com/seb-hyland/maestro.git#3ebaa97a)
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling dagger-macros v0.1.0 (https://github.com/seb-hyland/dagger.git#ebcf6411)
[INFO] [stderr]     Checking dagger_lib v0.1.11 (https://github.com/seb-hyland/dagger.git#ebcf6411)
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling maestro_macros v0.1.0 (https://github.com/seb-hyland/maestro.git#3ebaa97a)
[INFO] [stderr]     Checking maestro v0.2.10 (https://github.com/seb-hyland/maestro.git#3ebaa97a)
[INFO] [stderr]     Checking alphafold v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] error: Failed to spawn script checker!
[INFO] [stdout]        No such file or directory (os error 2)
[INFO] [stdout]    --> src/main.rs:122:18
[INFO] [stdout]     |
[INFO] [stdout] 122 |           script = r#"
[INFO] [stdout]     |  __________________^
[INFO] [stdout] 123 | |             echo "$pymol_script" > pymol_script.py
[INFO] [stdout] 124 | |             pymol -cq pymol_script.py
[INFO] [stdout] 125 | |         "#
[INFO] [stdout]     | |__________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: Failed to spawn script checker!
[INFO] [stdout]        No such file or directory (os error 2)
[INFO] [stdout]    --> src/main.rs:143:18
[INFO] [stdout]     |
[INFO] [stdout] 143 |           script = r#"
[INFO] [stdout]     |  __________________^
[INFO] [stdout] 144 | |             apptainer exec --nv \
[INFO] [stdout] 145 | |               -B /arc/project -B /scratch -B /cvmfs \
[INFO] [stdout] 146 | |               --home="$scratch_dir" \
[INFO] [stdout] ...   |
[INFO] [stdout] 162 | |                 --use_gpu_relax=True
[INFO] [stdout] 163 | |     "#
[INFO] [stdout]     | |______^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: a method with this name may be added to the standard library in the future
[INFO] [stdout]   --> src/main.rs:22:75
[INFO] [stdout]    |
[INFO] [stdout] 22 |                     let [af_out_file] = alphafold(&path, &molecule_name)?.into_array();
[INFO] [stdout]    |                                                                           ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: call with fully qualified syntax `into_array(...)` to keep using the current method
[INFO] [stdout]    = warning: once this associated item is added to the standard library, the ambiguity may cause an error or change in behavior!
[INFO] [stdout]    = note: for more information, see issue #48919 <https://github.com/rust-lang/rust/issues/48919>
[INFO] [stdout]    = note: `#[warn(unstable_name_collisions)]` (part of `#[warn(future_incompatible)]`) on by default
[INFO] [stdout] help: add `#![feature(alloc_slice_into_array)]` to the crate attributes to enable `Vec::<T, A>::into_array`
[INFO] [stdout]    |
[INFO] [stdout]  1 + #![feature(alloc_slice_into_array)]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: a method with this name may be added to the standard library in the future
[INFO] [stdout]   --> src/main.rs:43:81
[INFO] [stdout]    |
[INFO] [stdout] 43 |                     let [pymol_out_file] = pymol(base, others, &molecule_name)?.into_array();
[INFO] [stdout]    |                                                                                 ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: call with fully qualified syntax `into_array(...)` to keep using the current method
[INFO] [stdout]    = warning: once this associated item is added to the standard library, the ambiguity may cause an error or change in behavior!
[INFO] [stdout]    = note: for more information, see issue #48919 <https://github.com/rust-lang/rust/issues/48919>
[INFO] [stdout] help: add `#![feature(alloc_slice_into_array)]` to the crate attributes to enable `Vec::<T, A>::into_array`
[INFO] [stdout]    |
[INFO] [stdout]  1 + #![feature(alloc_slice_into_array)]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: Failed to spawn script checker!
[INFO] [stdout]        No such file or directory (os error 2)
[INFO] [stdout]    --> src/main.rs:122:18
[INFO] [stdout]     |
[INFO] [stdout] 122 |           script = r#"
[INFO] [stdout]     |  __________________^
[INFO] [stdout] 123 | |             echo "$pymol_script" > pymol_script.py
[INFO] [stdout] 124 | |             pymol -cq pymol_script.py
[INFO] [stdout] 125 | |         "#
[INFO] [stdout]     | |__________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: Failed to spawn script checker!
[INFO] [stdout]        No such file or directory (os error 2)
[INFO] [stdout]    --> src/main.rs:143:18
[INFO] [stdout]     |
[INFO] [stdout] 143 |           script = r#"
[INFO] [stdout]     |  __________________^
[INFO] [stdout] 144 | |             apptainer exec --nv \
[INFO] [stdout] 145 | |               -B /arc/project -B /scratch -B /cvmfs \
[INFO] [stdout] 146 | |               --home="$scratch_dir" \
[INFO] [stdout] ...   |
[INFO] [stdout] 162 | |                 --use_gpu_relax=True
[INFO] [stdout] 163 | |     "#
[INFO] [stdout]     | |______^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: a method with this name may be added to the standard library in the future
[INFO] [stdout]   --> src/main.rs:22:75
[INFO] [stdout]    |
[INFO] [stdout] 22 |                     let [af_out_file] = alphafold(&path, &molecule_name)?.into_array();
[INFO] [stdout]    |                                                                           ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: call with fully qualified syntax `into_array(...)` to keep using the current method
[INFO] [stdout]    = warning: once this associated item is added to the standard library, the ambiguity may cause an error or change in behavior!
[INFO] [stdout]    = note: for more information, see issue #48919 <https://github.com/rust-lang/rust/issues/48919>
[INFO] [stdout]    = note: `#[warn(unstable_name_collisions)]` (part of `#[warn(future_incompatible)]`) on by default
[INFO] [stdout] help: add `#![feature(alloc_slice_into_array)]` to the crate attributes to enable `Vec::<T, A>::into_array`
[INFO] [stdout]    |
[INFO] [stdout]  1 + #![feature(alloc_slice_into_array)]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: a method with this name may be added to the standard library in the future
[INFO] [stdout]   --> src/main.rs:43:81
[INFO] [stdout]    |
[INFO] [stdout] 43 |                     let [pymol_out_file] = pymol(base, others, &molecule_name)?.into_array();
[INFO] [stdout]    |                                                                                 ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: call with fully qualified syntax `into_array(...)` to keep using the current method
[INFO] [stdout]    = warning: once this associated item is added to the standard library, the ambiguity may cause an error or change in behavior!
[INFO] [stdout]    = note: for more information, see issue #48919 <https://github.com/rust-lang/rust/issues/48919>
[INFO] [stdout] help: add `#![feature(alloc_slice_into_array)]` to the crate attributes to enable `Vec::<T, A>::into_array`
[INFO] [stdout]    |
[INFO] [stdout]  1 + #![feature(alloc_slice_into_array)]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `alphafold` (bin "alphafold") due to 2 previous errors; 2 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `alphafold` (bin "alphafold" test) due to 2 previous errors; 2 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88", kill_on_drop: false }`
[INFO] [stdout] 077863cb086ef22bdbd23df989bd5063d29a25f5101c2a4f81a4062e4767fb88
